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TEMIMPS Publication List:
2011
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Allen G.S. and Stokes D.L., (2011) Modeling, Docking, Fitting of Atomic Structures to 3D Maps from Cryo-electron Microscopy. Methods in Molecular Biology.
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Shuart N.G. and Gonen T., (2011) The collection of high-resolution electron diffraction data. Methods in Molecular Biology.
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Wisedchaisri G and Gonen T, (2011) Phasing electron diffraction data by molecular replacement: strategy for structure determination and refinement. Methods in Molecular Biology.
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2010
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Ubarretxena-Belandia I. and Stokes D.L., (2010) Present and future of membrane protein structure determination by electron crystallography. Recent Advances in Electron Cryomicroscopy, 81:33-60.
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Mancia F and Love J., (2010) High-throughput expression and purification of membrane proteins.J Struct Biol. 172(1):85-93.
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Love J, Mancia F, Shapiro L, Punta M, Rost B, Girvin M, Wang DN, Zhou M, Hunt J, Szyperski T, Gouaux E, MacKinnon R, McDermott A, Honig B, Inouye M, Montelione G, and Hendrickson W., (2010). The New York Consortium on Membrane Protein Structure (NYCOMPS): A High-throughput Platform for Structural Genomics of Integral Membrane Proteins. J Struct Funct Genomics. 11(3):191-9.
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Coudray N, Hermann G, Caujolle-Bert D, Karathanou A, Erne-Brand F, Buessler JL, Daum P, Plitzko J, Chami M, Mueller U, Kihl H, Urban JP, Engel A, Rémigy HW., (2010) Automated screening of 2D crystallization trials using transmission electron microscopy: A high-throughput tool-chain for sample preparation and microscopic analysis. J Struct Biol. 173:365-74.
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Ioan Iacovache, Marco Biasini, Julia Kowal, Wanda Kukulski, Mohamed Chami, F. Gisou van der Goot, Andreas Engel, Hervé -W. Rémigy, (2010) The 2DX robot: A membrane protein 2D crystallization Swiss Army knife. Journal of Structural Biology 169(370):378.
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Stokes DL, Rice WJ, Hu M, Kim C, Ubarretxena-Belandia I., (2010) Two-dimensional crystallization of integral membrane proteins for electron crystallography. Methods Mol Biol. 654:187-205.
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R Diaz, WJ Rice, DL Stokes, (2010) Fourier-bessel reconstruction of helical assemblies. Methods Enzymol. 482:131-165
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Penczek PA., (2010) Fundamentals of three-dimensional reconstruction from projections. Methods Enzymol. 482:1-100.
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Kim C, Vink M, Hu M, Love J, Stokes DL, Ubarretxena-Belandia I., (2010) An automated pipeline to screen membrane protein 2D crystallization. J Struct Funct Genomics. 11(2):155-66.
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Hu M, Vink M, Kim C, Derr K, Koss J, D'Amico K, Cheng A, Pulokas J, Ubarretxena-Belandia I, Stokes D., (2010) Automated electron microscopy for evaluating two-dimensional crystallization of membrane proteins. J Struct Biol. 171(1):102-110.
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2009
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Punta M, Love J, Handelman S, Hunt JF, Shapiro L, Hendrickson, WA and Rost B., (2009) Structural genomics target selection for the New York Consortium on Membrane Protein Structure. J. Struct. Funct. Genomics. Vol 10, 255-268.
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Reichow L.S. and Gonen T., (2009) Lipid-protein interactions probed by electron crystallography. Current Opinion in Structural Biology 19:560 - 565.
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2008
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Andrews, S.A., Reichow, L.S. and Gonen T, (2008) Electron crystallography of aquaporins. IUBMB Life 60: 430 - 436.
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2007
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Ansgar Philippsen, Andreas D. Schenk, Gian A. Signorell, Valerio Mariani, Simon Berneche, Andreas Engel, (2007) Collaborative EM image processing with the IPLT image processing library and toolbox. Journal of Structural Biology 157(28):37.
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Vink M, Derr K, Love J, Stokes DL, Ubarretxena-Belandia I., (2007) A high-throughput strategy to screen 2D crystallization trials of membrane proteins. J Struct Biol. 160(3):295-304.
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Hohn M, Tang G, Goodyear G, Baldwin PR, Huang Z, Penczek PA, Yang C, Glaeser RM, Adams PD, Ludtke SJ. (2007) SPARX, a new environment for Cryo-EM image processing. J Struct Biol. 157(1):47-55.
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Baldwin PR, Penczek PA., (2007) The Transform Class in SPARX and EMAN2. J Struct Biol. 157(1):250-61.
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2006
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Kaufmann, T.C., Engel, A, Rémigy, H.-W., (2006) A novel method for detergent concentration determination. Biophys. J. 90, 310:317.
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